“The spirit of resistance to government is so valuable on certain occasions, that I wish it to be always kept alive. It will often be exercised when wrong, but better so than not to be exercised at all. I like a little rebellion now and then. It is like a storm in the atmosphere.”

Not exact, but along the same lines. As for the Lincoln quote, the factcheck article does a good job of not just proving that the quote was false, but that Lincoln more than likely would never have endorsed any of the sentiment behind it in the first place.

http://www.factcheck.org/article415.html

Waller’s article, which asserted Lincoln’s position, was riddled with errors in the first place:

Even without the quote marks, Waller’s article still suggests that Lincoln might have said it, or that the words sum up his policies. But we find little evidence that Lincoln endorsed anything so extreme as executing members of Congress for any reason, let alone for merely “acting to damage military morale.” We also discovered that Waller rests his case in part on a material misstatement of fact, and also on a serious historical error.